BIF731 - Advanced Bioinformatics

BIF731 Assignment 1 Solution and Discussion

Assignment No. 04 (Graded) SEMESTER Fall 2019 BIF731- Advanced Bioinformatics Total Marks: 10 Due Date: 05-02-2020 Instructions Please read the following instructions carefully before solving & submitting assignment: It should be clear that your assignment will not get any credit ( get zero marks) if: o The assignment is submitted after due date. o The submitted assignment does NOT open or file is corrupted. o The assignment is copied (from other student or ditto copy from handouts or internet). o Submit your solution within due date. Don’t wait for grace day. Grace Day is given only if there is any problem with LMS on due date. Note that no assignment will be accepted through email if there is any problem on grace day. Objective The objective of this assignment is: o Understanding I-Mutant For any query about the assignment, contact at bif731@vu.edu.pk GOOD LUCK Marks: 10 What is I-Mutant for? Write a step by step tutorial (with screen shots) on using this tool. It can be opened by clicking following link. http://folding.biofold.org/i-mutant/i-mutant2.0.html Note: Solution submitted through email will also not be acceptable. Each question carries equal marks Lectures Covered: Link given above Deadline: Your assignment must be uploaded/submitted on or before February 05, 2020.

SSIGNMNET Assignment No. 03 (Graded) SEMESTER Fall 2019 BIF731- Advanced Bioinformatics Total Marks: 10 Due Date: 29-01-2020 Instructions Please read the following instructions carefully before solving & submitting assignment: It should be clear that your assignment will not get any credit ( get zero marks) if: o The assignment is submitted after due date. o The submitted assignment does NOT open or file is corrupted. o The assignment is copied (from other student or ditto copy from handouts or internet). o Submit your solution within due date. Don’t wait for grace day. Grace Day is given only if there is any problem with LMS on due date. Note that no assignment will be accepted through email if there is any problem on grace day. Objective The objective of this assignment is: o Exploring and learning BioJava For any query about the assignment, contact at bif731@vu.edu.pk GOOD LUCK Marks: 10 Write a tutorial on BioJava that should describe following modules. This tutorial should not be more than three pages. Core Module Alignment Module Protein Structure Module Genomics Module Following link of CookBook of BioJava may help you a lot in this regard. Each module should have general knowledge/ information. A high level technical information is not required. Write in your own words, otherwise you may be awarded zero marks. http://biojava.org/wiki/BioJava:CookBook4.0/ Note: Solution submitted through email will also not be acceptable. Deadline: Your assignment must be uploaded/submitted on or before January 29, 2020