Assignment No. 04 (Graded)
SEMESTER Fall 2019
BIF733- Bioinformatics I (Essentials of Genome Informatics) Total Marks: 10
Due Date: 05-02-2020
Instructions
Please read the following instructions carefully before solving & submitting assignment:
It should be clear that your assignment will not get any credit ( get zero marks) if:
o The assignment is submitted after due date.
o The submitted assignment does NOT open or file is corrupted.
o The assignment is copied (from other student or ditto copy from handouts or internet).
o Submit your solution within due date. Don’t wait for grace day. Grace Day is given only if there is any problem with LMS on due date. Note that no assignment will be accepted through email if there is any problem on grace day.
Objective
The objective of this assignment is:
Learning FASTQ format
For any query about the assignment, contact at bif733@vu.edu.pk
GOOD LUCK
Marks: 10
Question 1: FASTQ is a text file commonly used to store sequencing data, particularly generated from Illumina and Ion Torrent platforms. You are instructed to write a comprehensive but concise (not more than of two pages) tutorial on FASTQ format. Explain each line of this format in your own words.
Note:
Solution submitted through email will also not be acceptable.
Each question carries equal marks.
Deadline: Your assignment must be uploaded/submitted on or before February 05, 2020.
Assignment No. 03 (Graded)
SEMESTER FALL 2019
BIF733- Bioinformatics-I (Essentials of Genome Informatics) Total Marks: 10
Due Date: 28-01-2020
Instructions
Please read the following instructions carefully before solving & submitting assignment:
It should be clear that your assignment will not get any credit ( get zero marks) if:
o The assignment is submitted after due date.
o The submitted assignment does NOT open or file is corrupted.
o The assignment is copied (from other student or ditto copy from handouts or internet).
o Submit your solution within due date. Don’t wait for grace day. Grace Day is given only if there is any problem with LMS on due date. Note that no assignment will be accepted through email if there is any problem on grace day.
Objective
The objective of this assignment is:
o Introducing various genome browsers
For any query about the assignment, contact at bif733@vu.edu.pk
GOOD LUCK
Marks: 10
Following are most common genome browsers. Compare these browsers in tabular form based on any five parameters. This should be in your own words. Plagiarism is a crime.
Name
URL
Ensembl
http://www.ensembl.org/
UCSC
http://genome.ucsc.edu/cgi-bin/hg
Map Viewer
http://www.ncbi.nlm.nih.gov/mapview/
Phytozome
http://www.phytozome.net/cgi-bin/gbrowse/
Gramene
http://www.gramene.org/genome_browser/
Note:
Solution submitted through email will also not be acceptable.
Plagiarized solution will be awarded zero marks.
Deadline: Your assignment must be uploaded/submitted on or before January 28, 2020.
BIF733 Assignment 1 Solution and Discussion
BIF733 - Bioinformatics I (Essentials of Genome Informatics)
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